#!/bin/bash

# set current time
curTime=`date +"%Y%m%d-%H%M%S"`

# set directories
LOG_DIR=/fslhome/[USERNAME]/logfiles/${curTIME}

# make log directory
mkdir -p ${LOG_DIR}

# submit batch job
for SUBJID in `cat SUBJECT_ID_FILENAME.txt`; do
	sbatch \
	-o ${LOG_DIR}/o-${SUBJID}.txt \
	-e ${LOG_DIR}/e-${SUBJID}.txt \
	/fslhome/[USERNAME]/[PATH_TO_RECON-ALL_SCRIPT]/run_recon-all.sh \
	${SUBJID}
	sleep 1
done